Hoffman2:Software Tools:FMRIprep: Difference between revisions
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singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif | singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif | ||
exit ##to stop container | exit ##to stop container | ||
singularity run --cleanenv fmriprep.simg path/to/data/dir path/to/output/dir \ | |||
participant --participant-label label | |||
Revision as of 19:14, 17 May 2022
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif exit ##to stop container
singularity run --cleanenv fmriprep.simg path/to/data/dir path/to/output/dir \ participant --participant-label label