Hoffman2:Software Tools:FMRIprep: Difference between revisions

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For using FMRIprep module in Hoffman, the following modules are needed as well
<!--For using FMRIprep module in Hoffman, the following modules are needed as well


FMRIprep version '''20.2.0rc0'''
FMRIprep version '''20.2.0rc0'''
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Note:
Note:
fmriprep version 20.1.1 has bug with multi echo scans.
fmriprep version 20.1.1 has bug with multi echo scans. -->

Revision as of 19:10, 17 May 2022

FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data

Official Website

Fmriprep Command Line Usage

From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.

module load singularity
singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif
exit ##to stop container