Hoffman2:Software Tools:FMRIprep: Difference between revisions
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For using FMRIprep module in Hoffman, the following modules are needed as well | <!--For using FMRIprep module in Hoffman, the following modules are needed as well | ||
FMRIprep version '''20.2.0rc0''' | FMRIprep version '''20.2.0rc0''' | ||
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Note: | Note: | ||
fmriprep version 20.1.1 has bug with multi echo scans. | fmriprep version 20.1.1 has bug with multi echo scans. --> |
Revision as of 19:10, 17 May 2022
FMRIPrep: A Robust Preprocessing Pipeline for fMRI Data
From version 20.2.1, FMRIprep is provided through Singularity The following command need to be run in a CentOS 7 node.
module load singularity singularity shell --userns /u/project/CCN/apps/fmriprep/rh7/20.2.1/fmriprep-20.2.1.sif exit ##to stop container