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===Script === | ===Script === | ||
setup_subject script is used to copy files from Dicom to Hoffman2 | setup_subject script is used to copy files from Dicom to Hoffman2, and do other processing such as nifti convert |
Revision as of 17:18, 10 June 2019
To apply for a Dicom server account,
Send email with the following information to the CCN system admin:
1. Your Hoffman2 account ID if you have one.
2. CC your request to the PI whose group directory you need access to for approval.
Here are some ways to access the Hoffman2 Cluster login nodes.
SSH - Command Line
Mac/Linux/Unix
Simple SSH
Use the ssh command from a terminal:
ssh login_id@dicomservername
where login_id is replaced by your user account ID. The server host name will be sent by email when you receive your account.
Windows
Using Putty for SSH terminal
Sharing File Systems with Mac
You can mount Dicom file system to your local Mac computer using SSH
Please follow this similar instruction for Hoffman2
Usage:
sshfs -o idmap=user -o uid=1010 -o gid=20 userid@dicomserver:/path/to/groupdir ~/MOUNTPOINT
Copy files to Hoffman2
From SSH command line
scp -r dicomuserID@dicomserver:/path/to/group_directory/subject hoffmanID@hoffman2.idre.ucla.edu:/path/to/your_directory/
or
rsync -av dicomuserID@dicomserver:/path/to/group_directory/subject hoffmanID@hoffman2.idre.ucla.edu:/path/to/your_directory/
Script
setup_subject script is used to copy files from Dicom to Hoffman2, and do other processing such as nifti convert