BIDs configuration file: Difference between revisions

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The Original_File_Name and the sub-SUBJ_Name are separated by a space.
The Original_File_Name and the sub-SUBJ_Name are separated by a space.


'''SUBJ''' will be converted automatically to the subject ID when you run the setup_subject_3 script.
'''SUBJ''' will be converted automatically to the subject ID
(So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name)
(For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" )


The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the [https://bids.neuroimaging.io/ BIDs format] rules.
The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the [https://bids.neuroimaging.io/ BIDs format] rules.

Revision as of 19:26, 22 January 2020

BIDs configuration file

BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.

This file should have the following format for all files you want to be converted to BIDs style names.

Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
Original_File_Name sub-SUBJ_Name
...

The Original_File_Name and the sub-SUBJ_Name are separated by a space.

SUBJ will be converted automatically to the subject ID (For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" )

The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the BIDs format rules.

Example:

gre_fieldmap_5 sub-SUBJ_fmap_mag
gre_fieldmap_6 sub-SUBJ_fmap_phase
MPRAGE_15 sub-SUBJ_mprage
Task_Block_1_9 sub-SUBJ_task1
Task_Block_2_10 sub-SUBJ_task2
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-SUBJ_T1w
MPRAGE_6.4_min__0.8X0.8X0.8mm_7 sub-SUBJ_T1w_rec-uncorrected