BIDs configuration file: Difference between revisions
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The Original_File_Name and the sub-SUBJ_Name are separated by a space. | The Original_File_Name and the sub-SUBJ_Name are separated by a space. | ||
'''SUBJ''' will be converted automatically to the subject ID | '''SUBJ''' will be converted automatically to the subject ID when you run the setup_subject_3 script. | ||
(So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name) | (So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name) | ||
Revision as of 19:23, 22 January 2020
BIDs configuration file
BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.
This file should have the following format for all files you want to be converted to BIDs style names.
Original_File_Name sub-SUBJ_Name Original_File_Name sub-SUBJ_Name Original_File_Name sub-SUBJ_Name ...
The Original_File_Name and the sub-SUBJ_Name are separated by a space.
SUBJ will be converted automatically to the subject ID when you run the setup_subject_3 script. (So "sub-SUBJ" will be "sub-1234" in case the subject ID is "1234" as the result file name)
The "Name" part in "sub-SUBJ_Name" should be replace by the text you want to use following the BIDs format rules.
Example:
gre_fieldmap_5 sub-SUBJ_fmap_mag gre_fieldmap_6 sub-SUBJ_fmap_phase MPRAGE_15 sub-SUBJ_mprage Task_Block_1_9 sub-SUBJ_task1 Task_Block_2_10 sub-SUBJ_task2
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-SUBJ_T1w MPRAGE_6.4_min__0.8X0.8X0.8mm_7 sub-SUBJ_T1w_rec-uncorrected