BIDs configuration file: Difference between revisions
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This file should have the following format for all files you want to be converted to BIDs style names. | This file should have the following format for all files you want to be converted to BIDs style names. | ||
original_File_Name sub-'''SUBJ'''_Name | |||
original_File_Name sub-'''SUBJ'''_Name | |||
original_File_Name sub-'''SUBJ'''_Name | |||
... | ... | ||
The | The original_File_Name and the sub-SUBJ_Name are separated by a space. | ||
'''SUBJ''' will be converted automatically to the subject ID | '''SUBJ''' will be converted automatically to the subject ID | ||
( | (For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" ) | ||
The "Name" | The "Name" in "sub-SUBJ_Name" should be replace by the string following the [https://bids.neuroimaging.io/ BIDs format] rules. | ||
====Example:==== | ====Example:==== | ||
gre_fieldmap_5 sub-'''SUBJ''' | gre_fieldmap_5 sub-'''SUBJ'''_magnitude | ||
gre_fieldmap_6 sub-'''SUBJ''' | gre_fieldmap_6 sub-'''SUBJ'''_phasediff | ||
Task_Block_1_9 sub-'''SUBJ'''_task-rest_bold | |||
Task_Block_1_9 sub-'''SUBJ''' | |||
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-'''SUBJ'''_T1w | MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-'''SUBJ'''_T1w | ||
Latest revision as of 17:47, 21 April 2022
BIDs configuration file
BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.
This file should have the following format for all files you want to be converted to BIDs style names.
original_File_Name sub-SUBJ_Name original_File_Name sub-SUBJ_Name original_File_Name sub-SUBJ_Name ...
The original_File_Name and the sub-SUBJ_Name are separated by a space.
SUBJ will be converted automatically to the subject ID (For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" )
The "Name" in "sub-SUBJ_Name" should be replace by the string following the BIDs format rules.
Example:
gre_fieldmap_5 sub-SUBJ_magnitude gre_fieldmap_6 sub-SUBJ_phasediff Task_Block_1_9 sub-SUBJ_task-rest_bold MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-SUBJ_T1w