BIDs configuration file: Difference between revisions
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==BIDs configuration file== | ==BIDs configuration file== | ||
BIDs configuration file is used to specify the naming convention for your data file in setup_subject_3. | BIDs configuration file is used to specify the naming convention for your data file in [[Hoffman2:Scripts:setup_subject_3]]. | ||
This file should have the following format for all files you want to be converted to BIDs style names. | |||
original_File_Name sub-'''SUBJ'''_Name | |||
original_File_Name sub-'''SUBJ'''_Name | |||
original_File_Name sub-'''SUBJ'''_Name | |||
... | |||
The original_File_Name and the sub-SUBJ_Name are separated by a space. | |||
'''SUBJ''' will be converted automatically to the subject ID | |||
(For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" ) | |||
The "Name" in "sub-SUBJ_Name" should be replace by the string following the [https://bids.neuroimaging.io/ BIDs format] rules. | |||
====Example:==== | |||
gre_fieldmap_5 sub-'''SUBJ'''_fmap_magnitude | |||
gre_fieldmap_6 sub-'''SUBJ'''_fmap_phasediff | |||
Task_Block_1_9 sub-'''SUBJ'''_task1 | |||
Task_Block_2_10 sub-'''SUBJ'''_task2 | |||
MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-'''SUBJ'''_T1w | |||
<!--====More complicated format example:==== | |||
For example you have multiple data with similar names and want to covert them all | |||
BOLD_AP_Block01_13 | |||
BOLD_AP_Block02_16 | |||
BOLD_AP_Block03_19 | |||
BOLD_AP_Block03_22--> | |||
Revision as of 18:01, 30 January 2020
BIDs configuration file
BIDs configuration file is used to specify the naming convention for your data file in Hoffman2:Scripts:setup_subject_3.
This file should have the following format for all files you want to be converted to BIDs style names.
original_File_Name sub-SUBJ_Name original_File_Name sub-SUBJ_Name original_File_Name sub-SUBJ_Name ...
The original_File_Name and the sub-SUBJ_Name are separated by a space.
SUBJ will be converted automatically to the subject ID (For example, for subject ID "1234", "sub-SUBJ" will be changed to "sub-1234" )
The "Name" in "sub-SUBJ_Name" should be replace by the string following the BIDs format rules.
Example:
gre_fieldmap_5 sub-SUBJ_fmap_magnitude gre_fieldmap_6 sub-SUBJ_fmap_phasediff Task_Block_1_9 sub-SUBJ_task1 Task_Block_2_10 sub-SUBJ_task2 MPRAGE_6.4_min__0.8X0.8X0.8mm_8 sub-SUBJ_T1w