Hoffman2:Scripts:clean up.sh

This script is used to clean up the following files.

1. feat folders (+.feat)
2. FSL stdout and stderr files (such as *.e28678.8, *.o4436)
3. files end with .con .grp .Icon .mat
4. tsplot
5. core.[0-9]

Load the module first

module load ccnscripts

For clean up feat folders,

clean_up.sh -f /PATH/TO/FOLDER

For .o and .e files

clean_up.sh -o /PATH/TO/FOLDER

For .con .grp .Icon .mat

clean_up.sh -g /PATH/TO/FOLDER

For tsplot

clean_up.sh -t /PATH/TO/FOLDER

For core.[0-9]

clean_up.sh -c /PATH/TO/FOLDER

• If you want to see what files will be deleted without really deleting them, use --dryrun, e.g.

 clean_up.sh -c --dryrun /PATH/TO/FOLDER

Log File:
A log file will be generated under the folder where you run it, named as "clean_up_log.YYYYMMDD_ss"

• What if I want to recover some of the deleted files?

This script will moved selected files to $SCRATCH folder. In case you want to recover files being cleaned up by this script, you can look for them in your $SCRATCH/DATE/TARGET/FOLDERS folder