Principles of Neuroimaging B - 2014: Difference between revisions

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*[[Notes for Instructors]]
*[[Notes for Instructors]]


 
=Week 1 - A late start=
==[http://doodle.com/pvskg5w3kh6wa86n Class Time Doodle Link]==
==''Monday 1/6/14'', ''Wednesday 1/8/14'' - No Class==
 
==[http://www.doodle.com/f7a8mssf4y5hik8h Help Session Doodle Link]==
 
=Week 1 Magnetic Resonance Imaging=
==''Monday 1/6/14'', "Wednesday 1/8/14" - No Class==


=Week 2 - in class lab project=
=Week 2 - in class lab project=
==''Monday 1/13/14'', "Wednesday 1/15/14" - EKG Circuit Build ''Speaker'': Cameron Rodriguez==
==''Monday 1/13/14'', ''Wednesday 1/15/14'' - EKG Circuit Build ''Speaker'': Cameron Rodriguez==


=Week 4 Magnetic Resonance Imaging=
=Week 4 Magnetic Resonance Imaging=
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[[image:PSatSeq.jpg|right]]
[[image:PSatSeq.jpg|right]]


=="Monday 1/27/14" - MRI I. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
==''Monday 1/27/1'' - MRI I. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
''Required Readings''
''Required Readings''
:*[[media:MRIforPNIB.pdf‎ | MRI Slides for three lectures] <-- as of 3-10-14 this is not really current. I have been unable to upload the version I emailed to the class members.
:*[[media:MRIforPNIB.pdf‎ | MRI Slides for three lectures] <-- as of 3-10-14 this is not really current. I have been unable to upload the version I emailed to the class members.
Line 39: Line 34:


=Week 5 MRI and multimodal imaging=
=Week 5 MRI and multimodal imaging=
=="Monday 2/3/14" - MRI (fMRI) III. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
==''Monday 2/3/14'' - MRI (fMRI) III. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
=="Wednesday 2/5/14" - Multimodal imaging. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
==''Wednesday 2/5/14'' - Multimodal imaging. ''Speaker'': [http://www.brainmapping.org/MarkCohen Cohen]==
:* [[Media:MultiModalNITP2013_sm.pdf‎ | Multimodal neuroimaging lecture slides]]
:* [[Media:MultiModalNITP2013_sm.pdf‎ | Multimodal neuroimaging lecture slides]]


=Week 6 Diffusion and PET
=Week 6 Diffusion and PET
=="Monday 2/10/14" - Diffusion imaging. "Speaker": Ben Ellingson
==''Monday 2/10/14'' - Diffusion imaging. ''Speaker'': Ben Ellingson
''Required Readings''
''Required Readings''
Slides should be up soon.
Slides should be up soon.
=="Wednesday 2/12/14" - Positron Emission Tomography. ''Speaker'':  [http://faculty.pharmacology.ucla.edu/institution/personnel?personnel_id=45558 Magnus Dahlboun]==
Handouts distributed in class.
=Week 7=
=="Monday 2/17/14"==
=="Wednesday 2/19/14"==
=Week 8 Transcranial Magnetostimulation and PET applications=
=="Monday 2/24/14. TMS.  ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]==
'Required Readings''
:* [[media:WuTMSFeb2013.pdf | Wu 2013 Lecture slides]]
:* [[media:TMSSafetyAndEthics-Rossi.pdf | TMS Safety and Ethics - Rossi, 2009]]
:* [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T0J-50CV801-1&_user=4423&_coverDate=01%2F31%2F2011&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000059605&_version=1&_urlVersion=0&_userid=4423&md5=f9fa3c7d63942dfb3c74e047a1f848bc&searchtype=a | M Sandrini, C Umilta and E Rusconi, “''The use of transcranial magnetic stimulation in cognitive neuroscience: a new synthesis of methodological issues.''” '''Neurosci Biobehav Rev''',  '''35'''(3): p. 516-536. 2011]
''Suggested Further Reading''
:* [[media:WuTMS-05-04-10.pdf | Handout for Wu TMS Lecture, 2010]]
Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:
:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine,  14(2): p. 409-414. 1990]
==Wednesday 2/26/14. PET applications. ''Speaker'':  [http://www.semel.ucla.edu/profile/edythe-london Edythe London]==
:*[[Media:NITP_PET_1-30-13.pdf | Dr. Edythe London PET Slides]]
:*[[Media:NITP_PET_2-26-14.pdf | Dr. Edythe London PET Slides]]
''Suggested Further Reading''
:*READING
<!-- :*[[media:PS1-PNIB2011.pdf | Problem Set 1]] -->
=Week 2 MRI Applications=
==''Monday 1/14/13'' - Functional MRI. ''Speaker'':  [http://www.brainmapping.org/MarkCohen Cohen]==
===Videos - Please Right Click and Save rather than Stream ===
:*[http://ccn.ucla.edu/media/20130114-part1.mp4 Lecture Part 1]
:*[http://ccn.ucla.edu/media/20130114-part2.mp4 Lecture Part 2]
==''Wednesday 1/16/13'' - Functional MRI. ''Speaker'':  [http://www.brainmapping.org/MarkCohen Cohen]==
OUTLINE
''Required Readings''
:*
''Suggested Further Reading''
''Suggested Further Reading''
:*[[Media:DTIHageman.pdf | Hageman DTI Slides]]
:*[[Media:DTIHageman.pdf | Hageman DTI Slides]]
Line 104: Line 51:
:*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39]
:*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39]


''Suggested Further Reading''
:*READING


=Week 3 =
==''Wednesday 2/12/14'' - Positron Emission Tomography. ''Speaker'':  [http://faculty.pharmacology.ucla.edu/institution/personnel?personnel_id=45558 Magnus Dahlboun]==
Handouts distributed in class.


==''Monday 1/21/13'' - NO CLASS - Martin Luther King Day ==
=Week 7=
==''Monday 2/17/14'' Presidents Day - No class==
==''Wednesday 2/19/14''==


==''Wednesday 1/23/13'' - Functional MRI. ''Speaker'':  [http://www.brainmapping.org/MarkCohen Cohen]==
=Week 8 Transcranial Magnetostimulation and PET applications=
 
==''Monday 2/24/14. TMS.  ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]==
=Week 4 PET Imaging=
 
==''Monday 1/28/13'' - PET. ''Speaker'':  [http://faculty.pharmacology.ucla.edu/institution/personnel?personnel_id=45558 Magnus Dahlboun]==
 
:*[[Media:PS1_–_PNIB2013.pdf‎ | Problem Set 1 Due 02/06/2013 by 5PM]]
 
==''Wednesday 1/30/13'' - PET. ''Speaker'':  [http://www.semel.ucla.edu/profile/edythe-london Edythe London]==
 
:*[[Media:NITP_PET_1-30-13.pdf | Dr. Edythe London PET Slides]]
 
=Week 5 =
 
==''Monday 2/4/13'' -  . ''Speaker'':  ==
 
 
==''Wednesday 2/6/13'' - No Lecture - Optional Help Session  ==
 
 
=Week 6 =
 
==''Monday 2/11/13'' -  Neuromodulation . ''Speaker'': [http://www.semel.ucla.edu/profile/alexander-bystritsky Alexander Bystritsky] ==
 
 
 
==''Wednesday 2/13/13'' - . ''Speaker'':  ==
 
=Week 7 =
 
==''Monday 2/18/13'' - NO CLASS - Presidents Day ==
 
==''Wednesday 2/20/13'' - Transcranial Magneto Stimulation (TMS). ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]==
'Required Readings''
'Required Readings''
:* [[media:WuTMSFeb2013.pdf | Wu 2013 Lecture slides]]
:* [[media:WuTMSFeb2013.pdf | Wu 2013 Lecture slides]]
Line 156: Line 73:
:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine,  14(2): p. 409-414. 1990]
:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine,  14(2): p. 409-414. 1990]


=Week 8 =
==Wednesday 2/26/14. PET applications. ''Speaker'':  [http://www.semel.ucla.edu/profile/edythe-london Edythe London]==


==''Monday 2/25/13'' - Functional Connectivity. ''Speaker'': Jesse Brown ==
:*[[Media:NITP_PET_1-30-13.pdf | Dr. Edythe London PET Slides]]
:*[[Media:NITP_PET_2-26-14.pdf | Dr. Edythe London PET Slides]] <-- not yet uploaded


=Week 9 - Spectroscopy=
==''Monday 3/3/14'' - Class canceled==
==''Wednesday 3/5/14'' - Spectroscopy. "Speaker:" Albert Thomas - UCLA Radiology


==''Wednesday 2/27/13'' - Simultaneous multimodal neuroimaging. ''Speaker'': Mark Cohen ==
=Week 10 - Compressed sensing and finals=
 
==''Monday 3/10/14'' - Compressed Sensing. "Speaker:" Ming Yan - UCLA Applied Mathematics
=== Room CHS 13-105, Near the biomedical library ===
Handouts to come.
 
   
:* [[Media:MultiModalNITP2013_sm.pdf‎ | Multimodal neuroimaging lecture slides]]
''Suggested Further Reading''
 
:*READING
=Week 9 =
 
==''Monday 3/4/13'' - Multi-voxel Pattern Analysis . ''Speaker'': Jesse Rissman==
 
:* [[Media:Rissman_MVPA_for_Principles_of_Neuroimaging_course_(March_2013).pdf‎ | Multi-voxel Pattern Analysis Lecture Slides]]
 
=== Room CHS 13-105 ===
 
==''Wednesday 3/6/13'' - . ''Speaker'': Martin Monti  ==
 
:* [[Media:NITP2012_MMonti_01_ExperimentalDesign_Advanced_print.pdf‎ | Advanced Experimental Design Lecture Slides]]
 
=== Room CHS 16-154 ===
 
=Week 10 =
 
==''Monday 3/11/13'' - NO CLASS - ==
 
==''Wednesday 3/13/13'' - . ''Speaker'':  Agatha Lenartowicz ==
 
:* [[Media:EEGNeurophys_130313.pdf | EEG Neurophysiology Lecture Slides]]
 
=== Room CHS 16-154 ===

Revision as of 21:37, 10 March 2014

Principles of Neuroimaging B, Winter, 2012 - Class Schedule and Syllabus

Main course page for Principles of Neuroimaging (2012-13)
M284A Principles of Neuroimaging A

Week 1 - A late start

Monday 1/6/14, Wednesday 1/8/14 - No Class

Week 2 - in class lab project

Monday 1/13/14, Wednesday 1/15/14 - EKG Circuit Build Speaker: Cameron Rodriguez

Week 4 Magnetic Resonance Imaging

Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies == OUTLINE Required Readings

HahnFig1.png above: Figure 1 from Hahn, 1950

Suggested Further Reading

File:PSatSeq.jpg

Monday 1/27/1 - MRI I. Speaker: Cohen

Required Readings

  • [[media:MRIforPNIB.pdf‎ | MRI Slides for three lectures] <-- as of 3-10-14 this is not really current. I have been unable to upload the version I emailed to the class members.

Wednesday 1/29/14 - MRI II. Speaker: Cohen

Week 5 MRI and multimodal imaging

Monday 2/3/14 - MRI (fMRI) III. Speaker: Cohen

Wednesday 2/5/14 - Multimodal imaging. Speaker: Cohen

=Week 6 Diffusion and PET ==Monday 2/10/14 - Diffusion imaging. Speaker: Ben Ellingson Required Readings Slides should be up soon. Suggested Further Reading

Sadly, the library does not have a subscription for the journals below (Mark has copies on reserve in his office):


Wednesday 2/12/14 - Positron Emission Tomography. Speaker: Magnus Dahlboun

Handouts distributed in class.

Week 7

Monday 2/17/14 Presidents Day - No class

Wednesday 2/19/14

Week 8 Transcranial Magnetostimulation and PET applications

Monday 2/24/14. TMS. Speaker: Allan Wu

'Required Readings

Suggested Further Reading

Once upon a time we demonstrated that this sort of magnetic stimulation can take place in the MRI machines:

Wednesday 2/26/14. PET applications. Speaker: Edythe London

Week 9 - Spectroscopy

Monday 3/3/14 - Class canceled

==Wednesday 3/5/14 - Spectroscopy. "Speaker:" Albert Thomas - UCLA Radiology

Week 10 - Compressed sensing and finals

==Monday 3/10/14 - Compressed Sensing. "Speaker:" Ming Yan - UCLA Applied Mathematics Handouts to come.

Suggested Further Reading

  • READING
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