Principles of Neuroimaging B - 2014 - Revision history

Mscohen at 18:19, 14 March 2014

2014-03-14T18:19:33Z

← Older revision		Revision as of 18:19, 14 March 2014
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	''Required Readings''		''Required Readings''
	Slides should be up soon.		Slides should be up soon.
	:*[[~~Media~~:1_DiffusionMRI_Methods_v1.pdf \| Ben Ellingson Diffusion Slides]] uploaded 3/14/14		:*[[media:1_DiffusionMRI_Methods_v1.pdf \| Ben Ellingson Diffusion Slides]] uploaded 3/14/14
	''Suggested Further Reading''		''Suggested Further Reading''
	:*[[~~Media~~:DTIHageman.pdf \| Hageman DTI Slides]]		:*[[media:DTIHageman.pdf \| Hageman DTI Slides]]
	:*[[~~Media~~:NICourse_DTILecture4Post_11-01-26.pdf \| Hageman DTI Notes 2/26/12]]		:*[[media:NICourse_DTILecture4Post_11-01-26.pdf \| Hageman DTI Notes 2/26/12]]
	:*[http://www.ncbi.nlm.nih.gov/pubmed/15037456?dopt=Citation Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69]		:*[http://www.ncbi.nlm.nih.gov/pubmed/15037456?dopt=Citation Diffusion tensor imaging of cerebral white matter: a pictorial review of physics, fiber tract anatomy, and tumor imaging patterns AJNR Am J Neuroradiol. 2004 Mar;25(3):356-69]

Mscohen: /* Diffusion imaging. Speaker: Ben Ellingson */

2014-03-14T18:17:10Z

Diffusion imaging. Speaker: Ben Ellingson

← Older revision		Revision as of 18:17, 14 March 2014
Line 51:		Line 51:
	''Required Readings''		''Required Readings''
	Slides should be up soon.		Slides should be up soon.
			:*[[Media:1_DiffusionMRI_Methods_v1.pdf \| Ben Ellingson Diffusion Slides]] uploaded 3/14/14
	''Suggested Further Reading''		''Suggested Further Reading''
	:*[[Media:DTIHageman.pdf \| Hageman DTI Slides]]		:*[[Media:DTIHageman.pdf \| Hageman DTI Slides]]
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	:*[http://www.ncbi.nlm.nih.gov/pubmed/8661285?dopt=Citation Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 1996 Jun;111(3):209-19]		:*[http://www.ncbi.nlm.nih.gov/pubmed/8661285?dopt=Citation Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B. 1996 Jun;111(3):209-19]
	:*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39]		:*[http://www.ncbi.nlm.nih.gov/pubmed/16950152?dopt=Citation Principles of diffusion tensor imaging and its applications to basic neuroscience research. Neuron. 2006 Sep 7;51(5):527-39]


	==''Wednesday 2/12/14''==		==''Wednesday 2/12/14''==

Mscohen: /* Compressed Sensing. Speaker: Ming Yan */

2014-03-12T23:05:33Z

Compressed Sensing. Speaker: Ming Yan

← Older revision		Revision as of 23:05, 12 March 2014
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	''Suggested Further Reading''		''Suggested Further Reading''
	:*READING		:*READING
	::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=~~1614066~~ ''"~~Compressed Sensing~~"'', ~~D. Donoho~~, IEEE ~~Trans~~. ~~Inform~~. ~~Theory 52:1289, 2006]~~		::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4472240 ''"An Introduction to Compressive Sampling"'' EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008] <-- Mark's favorite. This is a good overview of the field.
	::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]		::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007] Lustig demonstrates each step in the process with examples using MRI.
	::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=~~4472240~~ ''"~~An Introduction to Compressive Sampling~~"'' ~~EJ Candes~~, ~~MB Watkin~~, IEEE ~~Signal Processing Magazine~~, ~~March, 2008~~] ~~<-- Mark's favorite~~		::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 ''"Compressed Sensing"'', D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006] One of the more accessible formal discussions of CS
			::[http://dsp.rice.edu/cs Rice University Compressed Sensing Resources]. A repository of scholarly work on CS.

Mscohen: /* Compressed Sensing. Speaker: Ming Yan */

2014-03-12T23:02:21Z

Compressed Sensing. Speaker: Ming Yan

← Older revision		Revision as of 23:02, 12 March 2014
Line 101:		Line 101:
	''Suggested Further Reading''		''Suggested Further Reading''
	:*READING		:*READING
	::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 "Compressed Sensing", D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006]		::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 ''"Compressed Sensing"'', D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006]
	::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]		::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]
	::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4472240 ''"An Introduction to Compressive Sampling"'' EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008] <-- Mark's favorite		::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4472240 ''"An Introduction to Compressive Sampling"'' EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008] <-- Mark's favorite

Mscohen: /* Compressed Sensing. Speaker: Ming Yan */

2014-03-12T23:01:23Z

Compressed Sensing. Speaker: Ming Yan

← Older revision		Revision as of 23:01, 12 March 2014
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	:*READING		:*READING
	::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 "Compressed Sensing", D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006]		::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 "Compressed Sensing", D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006]
	::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging, M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]		::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance ''"Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging"'' M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]
			::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4472240 ''"An Introduction to Compressive Sampling"'' EJ Candes, MB Watkin, IEEE Signal Processing Magazine, March, 2008] <-- Mark's favorite

Mscohen: /* Compressed Sensing. Speaker: Ming Yan */

2014-03-12T22:57:07Z

Compressed Sensing. Speaker: Ming Yan

← Older revision		Revision as of 22:57, 12 March 2014
Line 101:		Line 101:
	''Suggested Further Reading''		''Suggested Further Reading''
	:*READING		:*READING
			::[http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=1614066 "Compressed Sensing", D. Donoho, IEEE Trans. Inform. Theory 52:1289, 2006]
			::[http://onlinelibrary.wiley.com/store/10.1002/mrm.21391/asset/21391_ftp.pdf?v=1&t=hsp7jehy&s=27fb10a08b071dd33590829f6d3101481109fae8&systemMessage=Wiley+Online+Library+will+be+disrupted+Saturday%2C+15+March+from+10%3A00-12%3A00+GMT+%2806%3A00-08%3A00+EDT%29+for+essential+maintenance Sparse MRI: The Application of Compressed Sensing for Rapid MR Imaging, M. Lustig, D. Donoho, J.M. Pauly, Magn. Reson. Med 58:1182–1195, 2007]

Mscohen at 16:40, 12 March 2014

2014-03-12T16:40:02Z

← Older revision		Revision as of 16:40, 12 March 2014
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	==''Monday 3/3/14'' - Class canceled==		==''Monday 3/3/14'' - Class canceled==
	==''Wednesday 3/5/14''==		==''Wednesday 3/5/14''==
	===Spectroscopy. ''Speaker:'' Albert Thomas ~~- UCLA Radiology.~~===		===Spectroscopy. ''Speaker:'' [http://radiology.ucla.edu/body.cfm?id=48&action=detail&ref=65 Albert Thomas]===
	Handouts distributed in class		Handouts distributed in class

	=Week 10 - Compressed sensing and finals=		=Week 10 - Compressed sensing and finals=
	==''Monday 3/10/14''==		==''Monday 3/10/14''==
	===Compressed Sensing. ''Speaker:'' Ming Yan ~~- UCLA Applied Mathematics~~===		===Compressed Sensing. ''Speaker:'' [http://www.math.ucla.edu/~yanm/ Ming Yan]===
	:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]		:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]

Mscohen: mscohen

2014-03-12T16:37:18Z

mscohen

← Older revision		Revision as of 16:37, 12 March 2014
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	=Week 3 - Swine flu and MRI=		=Week 3 - Swine flu and MRI=
	==''Monday 1/20/14==		==''Monday 1/20/14''==
	===Class canceled due to flu. Sorry===		===Class canceled due to flu. Sorry===
	==''Wednesday 1/22/14==		==''Wednesday 1/22/14''==
	Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies		Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies

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	=Week 8 Transcranial Magnetostimulation and PET applications=		=Week 8 Transcranial Magnetostimulation and PET applications=
	==''Monday 2/24/14.==		==''Monday 2/24/14''==
	===TMS. ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]===		===TMS. ''Speaker'': [http://faculty.bri.ucla.edu/institution/personnel?personnel_id=121107 Allan Wu]===
	'Required Readings''		'Required Readings''
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	:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine, 14(2): p. 409-414. 1990]		:*[http://onlinelibrary.wiley.com/doi/10.1002/mrm.1910140226/pdf MS Cohen, RM Weisskoff, RR Rzedzian and HL Kantor, “Sensory stimulation by time-varying magnetic fields.” Magnetic Resonance in Medicine, 14(2): p. 409-414. 1990]

	==Wednesday 2/26/14.==		==Wednesday 2/26/1.==
	===PET applications. ''Speaker'': [http://www.semel.ucla.edu/profile/edythe-london Edythe London]===		===PET applications. ''Speaker'': [http://www.semel.ucla.edu/profile/edythe-london Edythe London]===

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	==''Monday 3/3/14'' - Class canceled==		==''Monday 3/3/14'' - Class canceled==
	==''Wednesday 3/5/14''==		==''Wednesday 3/5/14''==
	===Spectroscopy. "Speaker:" Albert Thomas - UCLA Radiology.===		===Spectroscopy. ''Speaker:'' Albert Thomas - UCLA Radiology.===
	Handouts distributed in class		Handouts distributed in class

	=Week 10 - Compressed sensing and finals=		=Week 10 - Compressed sensing and finals=
	==''Monday 3/10/14''==		==''Monday 3/10/14''==
	===Compressed Sensing. "Speaker:" Ming Yan - UCLA Applied Mathematics===		===Compressed Sensing. ''Speaker:'' Ming Yan - UCLA Applied Mathematics===
	:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]		:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]

Mscohen at 16:31, 12 March 2014

2014-03-12T16:31:37Z

← Older revision		Revision as of 16:31, 12 March 2014
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	===- EKG Circuit Build. ''Speaker'': Cameron Rodriguez===		===- EKG Circuit Build. ''Speaker'': Cameron Rodriguez===

	=Week 4 - ~~Magnetic Resonance Imaging~~=		=Week 3 - Swine flu and MRI=
			==''Monday 1/20/14==
			===Class canceled due to flu. Sorry===
			==''Wednesday 1/22/14==
	Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies		Magnetic Resonance Imaging (MRI) is probably the most influential and most felxible current means of imaging the human brain. It features a vast number of separable contrast mechanisms, and a near ideal combination of non-invasiveness, safety, resolution and metric accuracy. However, it is extraordinarily expensive and has limited temporal resolution, especially for functional studies

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	''Suggested Further Reading''		''Suggested Further Reading''
	[[image:PSatSeq.jpg\|right]]		[[image:PSatSeq.jpg\|right]]
			=Week 4 - Magnetic Resonance Imaging=

	==''Monday 1/27/1'' - MRI==		==''Monday 1/27/1'' - MRI==

Mscohen: /* Monday 3/10/14 */

2014-03-11T05:48:28Z

Monday 3/10/14

← Older revision		Revision as of 05:48, 11 March 2014
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	===Compressed Sensing. "Speaker:" Ming Yan - UCLA Applied Mathematics===		===Compressed Sensing. "Speaker:" Ming Yan - UCLA Applied Mathematics===
	:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]		:*[[IntroductionToCS.pdf \| Ming Yan's slides on compressive sensing]]

			To access the slides from the course web site listed on his handout, The username is "caame654", and password is "dense".

	''Suggested Further Reading''		''Suggested Further Reading''
	:*READING		:*READING