Principles of Neuroimaging A - 2011 - Revision history

Ccn admin: 42 revisions

2014-01-16T03:46:28Z

42 revisions

← Older revision	Revision as of 03:46, 16 January 2014
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Mscohen: /* - Circuits I. Mark Cohen */

2012-02-14T22:44:59Z

- Circuits I. Mark Cohen

← Older revision		Revision as of 22:44, 14 February 2012
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	''Suggested Further Reading''		''Suggested Further Reading''
	:*[http://video.google.com/videoplay?docid=5645396659673218353&q=Physics+for+Future+Presidents+Electricity&total=5&start=0&num=10&so=0&type=search&plindex=0#0h20m30s Video intro lecture on charge, current and voltage].		:*[http://video.google.com/videoplay?docid=5645396659673218353&q=Physics+for+Future+Presidents+Electricity&total=5&start=0&num=10&so=0&type=search&plindex=0#0h20m30s Video intro lecture on charge, current and voltage].
			:*[[media:Electricity_Basics.pdf‎ \| Well organized text on electrical concepts by Tony R. Kuphaldt]]
	:*[http://en.wikibooks.org/wiki/Circuit_Theory Circuit Theory - Wikibook]		:*[http://en.wikibooks.org/wiki/Circuit_Theory Circuit Theory - Wikibook]

Mscohen: /* MIDTERM POSTED */

2011-11-10T00:12:38Z

MIDTERM POSTED

← Older revision		Revision as of 00:12, 10 November 2011
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	== MIDTERM POSTED ==		== MIDTERM POSTED ==

	:Click [~~[media~~:~~MidTermFall2010~~.~~pdf‎~~ \| here for the Midterm. Due in class ~~Mon~~. 11/8]]		:Click [http://www.brainmapping.org/NITP/tests/PNIA2010Midterm.pdf \| here for the Midterm. Due in class Wed. 11/16]

	===- Optical Applications. ''Speaker'': tbd===		===- Optical Applications. ''Speaker'': tbd===
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	''Suggested Further Reading''		''Suggested Further Reading''


	==''Wednesday 11/2/11'' ==		==''Wednesday 11/2/11'' ==

Mscohen at 21:58, 1 November 2011

2011-11-01T21:58:12Z

@@ Line 271: / Line 271: @@
 ==''Wednesday 11/2/11'' ==
-===- Optical and flourescence methods in dynamic neural systems. ''Speaker'': [mailto:kmcevoy@ucla.edu Kevin McEvoy]===
+=== - Circuits II. [http://www.brainmapping.org/MarkCohen Mark Cohen]===
 #Outline
@@ Line 287: / Line 287: @@
 ==''Wednesday 11/9/11'' - ==
-Why circuits?
+TBD
 ==''Friday 11/11/11'' - Veteran's Day==

Mscohen at 17:41, 28 October 2011

2011-10-28T17:41:25Z

← Older revision		Revision as of 17:41, 28 October 2011
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	==''Friday 10/28/11''==		==''Friday 10/28/11''==
			=== - Circuits I. [http://www.brainmapping.org/MarkCohen Mark Cohen]===

			Why circuits?
			:(Virtually) Every device you use in your research is electronic. You access your primary data only indirectly
			:The device you ''really'' want in your lab doesn't exist. You very well may have to make it.
			:There are electronic analogs to most of the linear systems that you have so far studied (and ''vice versa'' - the tools you now understand can be used to analyze and predict circuit behavior).

			:If you have not had any of this background, you might want to have a look at this handout, [[Media:Electricity.pdf\|Electrical Circuits]], in advance. There are near infinite numbers of resources on the web that cover similar material (near enough to infinite that by the time you read all of them, there would be a whole new set.) I have recently come across a link to [http://www.allaboutcircuits.com/ Online Books: All About Circuits] ''IF'' you want practical hands-on knowledge about this material, my all-time favorite text is [http://www.google.com/products/catalog?hl=en&client=safari&rls=en-us&ei=uVSPSfaxE5nMsAPf-tmSCQ&resnum=1&q=art+of+electronics&um=1&ie=UTF-8&cid=8820839049329255765#ps-sellers "Horowitz and Hill: ''The Art of Electronics.''"] The latest edition, however, is dated 1989 and a new third edition is promised. I have therefore stopped short of recommending a purchase unless your need to make circuits is immediate. In this book, you will find an excellent education on the fundamental principles of electrical circuits and an incredible compendium of practical data, such as how to assemble circuit boards, how to make measurements, etc...)

			Readings:
			:*[[Media: Circuits.pdf\|Circuits 1 & 2]]
			:*[http://www.brainmapping.org/NITP/PNA/Readings/Circuits.pdf Slides shown in class (''revised 10:30pm 1/28/2010'')]
			:*[http://www.elsevier.com/wps/find/bookdescription.cws_home/710026/description#description van Drongelen:] Chapter 2 and 10
			**You may or may not find this comprehensible without chapters 5 through 9.

			We will discuss:
			:*Passive Circuit Elements: Resistors, Capacitors, Inductors
			:*Gain
			:*Transformers
			:*Rectifiers
			:*Active Elements
			::- ''Amplifiers''
			::- ''Transistors''
			::- ''Op Amps''
			:*Solutions with Matrices
			''Suggested Further Reading''
			:*[http://video.google.com/videoplay?docid=5645396659673218353&q=Physics+for+Future+Presidents+Electricity&total=5&start=0&num=10&so=0&type=search&plindex=0#0h20m30s Video intro lecture on charge, current and voltage].
			:*[http://en.wikibooks.org/wiki/Circuit_Theory Circuit Theory - Wikibook]

	=Week 6: Optical Neuroimaging=		=Week 6: Optical Neuroimaging=

Mscohen: /* Wednesday 10/26/11 */

2011-10-25T22:33:06Z

Wednesday 10/26/11

← Older revision		Revision as of 22:33, 25 October 2011
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	:''Note: These chapters are light on math and try to focus on a conceptual understanding''		:''Note: These chapters are light on math and try to focus on a conceptual understanding''

	THE FOLLOWING PROBLEM SETS ARE ASSIGNED AS OF 10-25-11 (valid at 4p)		THE FOLLOWING PROBLEM SETS ARE ASSIGNED AS OF 10-25-11 (valid at 3:30p 10/25/11)

	Time and Frequency / Spectral Filters		Time and Frequency / Spectral Filters

Mscohen: /* Wednesday 10/26/11 */

2011-10-25T22:32:21Z

Wednesday 10/26/11

← Older revision		Revision as of 22:32, 25 October 2011
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	:[http://www.brainmapping.org/NITP/PNA/ConvFThtml/ConvolutionWorksheet.pdf Fourier transform and Convolution Worksheet]. [http://www.brainmapping.org/NITP/PNA/ConvFThtml/ConvFT.html (''Solutions'').]		:[http://www.brainmapping.org/NITP/PNA/ConvFThtml/ConvolutionWorksheet.pdf Fourier transform and Convolution Worksheet]. [http://www.brainmapping.org/NITP/PNA/ConvFThtml/ConvFT.html (''Solutions'').]
	:[http://www.brainmapping.org/NITP/PNA/ConvFThtml/Something.wav Sound file for worksheet above.]		:[http://www.brainmapping.org/NITP/PNA/ConvFThtml/Something.wav Sound file for worksheet above.]
	~~----~~

	~~I suggest very strongly that you brush up on linear algebra during this week in anticipation of Dr. Sugar's lectures in statistics. In particular, I would like you to have an understanding of :~~

	~~:''Matrices as solutions to linear equations - determinants and inverses''~~
	~~:''Matrix multiplication''~~

	~~For these, I can recommend the Hefferon text noted above.~~

	==''Friday 10/28/11''==		==''Friday 10/28/11''==

Mscohen: /* Wednesday 10/26/11 */

2011-10-25T22:31:59Z

Wednesday 10/26/11

← Older revision		Revision as of 22:31, 25 October 2011
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	THE FOLLOWING PROBLEM SETS ARE ASSIGNED AS OF 10-25-11 (valid at 4p)		THE FOLLOWING PROBLEM SETS ARE ASSIGNED AS OF 10-25-11 (valid at 4p)

	~~:'''Problem Set 2B modeling in matlab'''~~		Time and Frequency / Spectral Filters

	[[Media: ProblemSet3A.pdf\|Problem Set 2A]] and		[[Media: ProblemSet3A.pdf\|Problem Set 3A]] and
	[http://www.brainmapping.org/NITP/PNA/html/TwoDimensions.html Problem Set 2B]		[http://www.brainmapping.org/NITP/PNA/html/TwoDimensions.html Problem Set 3B]

	----		----

Mscohen: /* - Fourier Transform Properties. Speaker: Mark Cohen */

2011-10-25T22:29:53Z

- Fourier Transform Properties. Speaker: Mark Cohen

← Older revision		Revision as of 22:29, 25 October 2011
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	:*[http://www.dspguide.com/CH6.PDF Convolution]		:*[http://www.dspguide.com/CH6.PDF Convolution]
	:*[http://www.dspguide.com/CH8.PDF Discrete Fourier Transform (DFT)]		:*[http://www.dspguide.com/CH8.PDF Discrete Fourier Transform (DFT)]
	:''Note: These chapters are ~~lite~~ on math and try to focus on a conceptual understanding''		:''Note: These chapters are light on math and try to focus on a conceptual understanding''

			THE FOLLOWING PROBLEM SETS ARE ASSIGNED AS OF 10-25-11 (valid at 4p)

	:'''Problem Set 2B modeling in matlab'''		:'''Problem Set 2B modeling in matlab'''

Mscohen: /* - Statistics for Imaging I. Speaker: Catherine Sugar */

2011-10-19T16:42:42Z

- Statistics for Imaging I. Speaker: Catherine Sugar

← Older revision		Revision as of 16:42, 19 October 2011
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	''Required Readings''		''Required Readings''
	:*[[media: Mumford_stat_modeling.pdf \| Statistical Modeling and Inference (pdf)]]		:*[[media: Mumford_stat_modeling.pdf \| Statistical Modeling and Inference (pdf)]]
	:*[[media: ~~CohenClassSlides10_18_10~~.pdf \| Slides used in class (set 2)]]		:*[[media: CohenClassSlides10_19_11post.pdf \| Slides used in class (set 2)]]

	:*The General Linear Model		:*The General Linear Model