Hoffman2:Submit jobarray - Revision history

Dmargolis at 19:20, 29 November 2017

2017-11-29T19:20:33Z

← Older revision		Revision as of 19:20, 29 November 2017
Line 17:		Line 17:
	. /u/local/Modules/default/init/modules.sh		. /u/local/Modules/default/init/modules.sh
	module use /u/project/CCN/apps/modulefiles		module use /u/project/CCN/apps/modulefiles

			# Load the FSL module
	module load fsl		module load fsl

Dmargolis: Dmargolis moved page Hoffman2:Submit jobarray example to Hoffman2:Submit jobarray

2017-11-29T19:15:42Z

Dmargolis moved page Hoffman2:Submit jobarray example to Hoffman2:Submit jobarray

← Older revision	Revision as of 19:15, 29 November 2017
(No difference)

Dmargolis at 02:49, 29 November 2017

2017-11-29T02:49:28Z

← Older revision		Revision as of 02:49, 29 November 2017
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	echo "This is subject ${subjects[$SGE_TASK_ID]}"		echo "This is subject ${subjects[$SGE_TASK_ID]}"

	# ~~Now do something with fsl, feat, etc~~.		# Your script content goes here...</nowiki>
	~~sleep 600~~</nowiki>

Dmargolis: Created page with "Back to all things Hoffman2 #!/bin/bash #$ -cwd # error = Merged with joblog #$ -o joblog.$JOB_ID.$TASK_ID #$ -j y #$ -pe shared 2 #$ -l h_rt=8:00:00,h_d..."

2017-11-14T22:19:41Z

Created page with "Back to all things Hoffman2 <nowiki>#!/bin/bash #$ -cwd # error = Merged with joblog #$ -o joblog.$JOB_ID.$TASK_ID #$ -j y #$ -pe shared 2 #$ -l h_rt=8:00:00,h_d..."

New page

[[Hoffman2|Back to all things Hoffman2]]
<nowiki>#!/bin/bash
#$ -cwd
# error = Merged with joblog
#$ -o joblog.$JOB_ID.$TASK_ID
#$ -j y
#$ -pe shared 2
#$ -l h_rt=8:00:00,h_data=4G
# Email address to notify
#$ -M $USER@mail
# Notify when
#$ -m a
# Job array indexes
#$ -t 1-5:1

# Load the job environment:
. /u/local/Modules/default/init/modules.sh
module use /u/project/CCN/apps/modulefiles
module load fsl

# This is optional
# More info here: https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:FSL
export NO_FSL_JOBS=true

# Set up the subjects list
declare -a subjects

subjects[1]="su3v3hkaykw2"
subjects[2]="wxg5mk5u5xbz"
subjects[3]="6q2bgkqu5grp"
subjects[4]="whjue68jmwyh"
subjects[5]="pfx3ju9wz8rr"

echo "This is sub-job $SGE_TASK_ID"
echo "This is subject ${subjects[$SGE_TASK_ID]}"

# Now do something with fsl, feat, etc.
sleep 600</nowiki>