Hoffman2:Scripts:switch freesurfer - Revision history

Dmargolis at 14:20, 8 July 2017

2017-07-08T14:20:35Z

← Older revision		Revision as of 14:20, 8 July 2017
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	<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote>		<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote>

	==Overview==		<!--==Overview==
	Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2.		Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2.

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	switch_freesurfer --switch 5.0.0		switch_freesurfer --switch 5.0.0
	switch_freesurfer -h		switch_freesurfer -h
	switch_freesurfer --check		switch_freesurfer --check-->

Dmargolis at 17:26, 22 May 2017

2017-05-22T17:26:10Z

← Older revision		Revision as of 17:26, 22 May 2017
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			[[Hoffman2:Scripts \| Back to Hoffman2 Scripts]]

	<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote>		<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote>

Dmargolis at 17:25, 22 May 2017

2017-05-22T17:25:21Z

← Older revision		Revision as of 17:25, 22 May 2017
Line 1:		Line 1:
			<blockquote style="border: solid red 2px; font-weight: bold; padding: 2px; background-color: lightgray;">This page is deprecated. Please see [[Hoffman2:Modules]] for more information about CCN-supported software on Hoffman2.</blockquote>

	==Overview==		==Overview==
	Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2.		Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2.



	==Usage==		==Usage==

Ccn admin: 2 revisions

2014-01-16T03:15:03Z

2 revisions

← Older revision	Revision as of 03:15, 16 January 2014
(No difference)

Elau at 19:26, 18 October 2012

2012-10-18T19:26:23Z

Elau: Created page with "==Overview== Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2. ==Usage== ===Initialization / Switching === If you have never used the tool..."

2012-10-18T19:23:52Z

Created page with "==Overview== Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2. ==Usage== ===Initialization / Switching === If you have never used the tool..."

New page

==Overview==
Use this tool to keep consistent on the FreeSurfer version you are using on Hoffman2.

==Usage==
===Initialization / Switching ===
If you have never used the tool before, your first usage needs to be to set your FreeSurfer version. e.g.
$ switch_freesurfer -s 5.0.0
would set your FreeSurfer version to 5.0.0

===Checking which version is active===
You can always check which version you are using with
$ switch_freesurfer -c

===Dropping out of the program===
And if you no longer wish to use the <code>switch_freesurfer</code> system and instead always use the "current" version maintained on Hoffman2
$ switch_freesurfer -d
will remove you from the program.

'''NOTE: Whenever you switch FreeSurfer versions or remove your self from the switch_freesurfer program, you need to log in and log out for the changes to take full effect.'''

===Help===
Call the program without any options, or with "-h" or "--help" to see the full usage and help information
$ switch_freesurfer
Description: switch_freesurfer easily and cleanly switches between various fsl versions.

Usage: switch_freesurfer [OPTIONS]
Options:
-h, --help Display this help/usage message
-v, --verbose Verbose output
-s, --switch VERSION Designate the appropriate freesurfer version.
If switching between versions, you must log out
then back it to reset up your environment.
Available versions are: 4.0.5, 4.4.0, 5.0.0, 5.1.0
-c, --check Checks for current fsl version being used
-d, --delete Stops using this system so you instead use the current version
of the tool at all times. You MUST log out and then back
in to properly reset your environment.

Examples:
switch_freesurfer -s 4.4.0
switch_freesurfer --switch 5.0.0
switch_freesurfer -h
switch_freesurfer --check

← Older revision		Revision as of 19:26, 18 October 2012
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	Call the program without any options, or with "-h" or "--help" to see the full usage and help information		Call the program without any options, or with "-h" or "--help" to see the full usage and help information
	$ switch_freesurfer		$ switch_freesurfer
	Description: switch_freesurfer easily and cleanly switches between various ~~fsl~~ versions.		Description: switch_freesurfer easily and cleanly switches between various FreeSurfer versions.

	Usage: switch_freesurfer [OPTIONS]		Usage: switch_freesurfer [OPTIONS]
Line 31:		Line 31:
	-h, --help Display this help/usage message		-h, --help Display this help/usage message
	-v, --verbose Verbose output		-v, --verbose Verbose output
	-s, --switch VERSION Designate the appropriate ~~freesurfer~~ version.		-s, --switch VERSION Designate the appropriate FreeSurfer version.
	If switching between versions, you must log out		If switching between versions, you must log out
	then back it to reset up your environment.		then back it to reset up your environment.
	Available versions are: 4.0.5, 4.4.0, 5.0.0, 5.1.0		Available versions are: 4.0.5, 4.4.0, 5.0.0, 5.1.0
	-c, --check Checks for current ~~fsl~~ version being used		-c, --check Checks for current FreeSurfer version being used
	-d, --delete Stops using this system so you instead use the current version		-d, --delete Stops using this system so you instead use the current version
	of the tool at all times. You MUST log out and then back		of the tool at all times. You MUST log out and then back