Hoffman2:Python - Revision history

Hwang: /* CCN existing Conda Environments */

2023-11-01T00:21:07Z

CCN existing Conda Environments

← Older revision		Revision as of 00:21, 1 November 2023
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	/u/project/CCN/apps/conda/rh7/ccn_py37		/u/project/CCN/apps/conda/rh7/ccn_py37

	~~tf230~~ (for Tensorflow 2.3.0)		tf (for Tensorflow 2.13.1 with cpu)

	/u/project/CCN/apps/conda/rh7/~~bcgnet~~/~~tf230~~		/u/project/CCN/apps/conda/rh7/tf

			tf2_13-gpu (for Tensorflow 2.13.1 with gpu)

			/u/project/CCN/apps/conda/rh7/tf

	==Python 2 Statement==		==Python 2 Statement==

2023-11-01T00:20:18Z

Use Conda for Python virtual environment

← Older revision		Revision as of 00:20, 1 November 2023
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	To use conda, first load the module		To use conda, first load the module

	module load ~~conda~~		module load anaconda3

	Then run the following command to setup the path		Then run the following command to setup the path

2023-04-03T21:40:26Z

← Older revision		Revision as of 21:40, 3 April 2023
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	Next, generate a conda environment with your preferred Python version		Next, generate a conda environment with your preferred Python version

	conda create --prefix /u/project/YOUR_GROUP/YOUR_CONDA_ENV_NAME python=3.7.3		conda create --prefix /u/project/YOUR_GROUP/YOUR_CONDA_ENV_NAME python=3.9.6

	This will generate a conda environment with python 3.7.3 (you can choose other existing version)		This will generate a conda environment with python 3.9.6 (you can choose other existing version)

	Activate your Conda environment		Activate your Conda environment

2022-02-09T23:57:25Z

CCN existing Conda Environments

← Older revision		Revision as of 23:57, 9 February 2022
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	=== CCN existing Conda Environments ===		=== CCN existing Conda Environments ===

	ccn_py37		ccn_py37 (equipped with nibabel, nilearn, pydicom, pandas, scikit-learn, scipy and Python 3.7)

	/u/project/CCN/apps/conda/rh7/ccn_py37		/u/project/CCN/apps/conda/rh7/ccn_py37

	tf230		tf230 (for Tensorflow 2.3.0)

	/u/project/CCN/apps/conda/rh7/bcgnet/tf230		/u/project/CCN/apps/conda/rh7/bcgnet/tf230

2022-02-09T23:55:58Z

Use Conda for Python virtual environment

← Older revision		Revision as of 23:55, 9 February 2022
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	This command will install Numpy library into this very Conda environment.		This command will install Numpy library into this very Conda environment.

	~~One you want to leave this~~ Conda ~~environement~~, just type in		To exit the Conda environment, just type in

	conda deactivate		conda deactivate

2022-02-09T23:55:26Z

Use Conda for Python virtual environment

← Older revision		Revision as of 23:55, 9 February 2022
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	pip install numpy		pip install numpy

	This will install Numpy into this environment.		This command will install Numpy library into this very Conda environment.

	One you want to leave this Conda environement, just type in		One you want to leave this Conda environement, just type in

2022-02-09T23:54:16Z

Use Python in Hoffman2

← Older revision		Revision as of 23:54, 9 February 2022
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	conda deactivate		conda deactivate

			=== CCN existing Conda Environments ===

			ccn_py37

			/u/project/CCN/apps/conda/rh7/ccn_py37

			tf230

			/u/project/CCN/apps/conda/rh7/bcgnet/tf230

	==Python 2 Statement==		==Python 2 Statement==

2022-02-09T23:52:13Z

Use Conda for Python virtual environment

← Older revision		Revision as of 23:52, 9 February 2022
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	python --version		python --version

			Then you can install other Python libraries you need here by "pip install". For example,

			pip install numpy

			This will install Numpy into this environment.

			One you want to leave this Conda environement, just type in

			conda deactivate

	==Python 2 Statement==		==Python 2 Statement==

2022-02-09T23:50:07Z

Use Conda for Python virtual environment

← Older revision		Revision as of 23:50, 9 February 2022
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	Next, generate a conda environment with your preferred Python version		Next, generate a conda environment with your preferred Python version

	conda create --prefix /u/project/YOUR_GROUP/~~YOUR_FOLDER~~ python=3.7.3		conda create --prefix /u/project/YOUR_GROUP/YOUR_CONDA_ENV_NAME python=3.7.3

	This will generate a conda environment with python 3.7.3 (you can choose other existing version)		This will generate a conda environment with python 3.7.3 (you can choose other existing version)

			Activate your Conda environment

			conda activate /u/project/YOUR_GROUP/YOUR_CONDA_ENV_NAME

			Then you should see the ssh prompt changes to (/u/project/YOUR_GROUP/YOUR_CONDA_ENV_NAME) in front of your cursor. This means you are inside of the Conda virtual environment

			Try check the Python version and see if it matches what you have picked

			python --version

	==Python 2 Statement==		==Python 2 Statement==

2022-02-09T23:43:58Z

Use Conda for Python virtual environment

← Older revision		Revision as of 23:43, 9 February 2022
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	module load conda		module load conda

			Then run the following command to setup the path

			source $CONDA_DIR/etc/profile.d/conda.sh

			Next, generate a conda environment with your preferred Python version

			conda create --prefix /u/project/YOUR_GROUP/YOUR_FOLDER python=3.7.3

			This will generate a conda environment with python 3.7.3 (you can choose other existing version)

	==Python 2 Statement==		==Python 2 Statement==