FAQ - Revision history

Dmargolis: /* How do I properly transfer my data between two machines on the network? */

2017-07-08T15:48:51Z

How do I properly transfer my data between two machines on the network?

← Older revision		Revision as of 15:48, 8 July 2017
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	** <b>FIX</b>: Either provide a unique name for different file formats (e.g. subj_series_nifti.nii.gz or sub_series_ana.img/hdr) or keep different file formats in different directories (e.g. my_study/my_subj/raw_data/nifti/{nii images} and my_study/my_subj/raw_data/analyze/{analyze images}		** <b>FIX</b>: Either provide a unique name for different file formats (e.g. subj_series_nifti.nii.gz or sub_series_ana.img/hdr) or keep different file formats in different directories (e.g. my_study/my_subj/raw_data/nifti/{nii images} and my_study/my_subj/raw_data/analyze/{analyze images}

	==How do I ~~properly~~ transfer my data between two machines ~~on the network~~?==		==How do I transfer my data between two machines?==
	https://www.hoffman2.idre.ucla.edu/file-transfer/		https://www.hoffman2.idre.ucla.edu/file-transfer/
	<!--==How do I properly transfer my data between two machines on the network?==		<!--==How do I properly transfer my data between two machines on the network?==

Dmargolis: /* How do I properly transfer my data between two machines on the network? */

2017-07-08T15:48:29Z

How do I properly transfer my data between two machines on the network?

← Older revision		Revision as of 15:48, 8 July 2017
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	==How do I properly transfer my data between two machines on the network?==		==How do I properly transfer my data between two machines on the network?==
			https://www.hoffman2.idre.ucla.edu/file-transfer/
			<!--==How do I properly transfer my data between two machines on the network?==
	===The special Case===		===The special Case===
	-Some versions of fsl contain recursive linking.		-Some versions of fsl contain recursive linking.
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	===The General Case===		===The General Case===
	If you're certain your data set does not have these problems, for example if you're transferring <i><b>only</b></i> you can do a simple scp transfer. Here's an example of an scp transfer of a directory without all the tar magic.		If you're certain your data set does not have these problems, for example if you're transferring <i><b>only</b></i> you can do a simple scp transfer. Here's an example of an scp transfer of a directory without all the tar magic.
	$ scp -r /path/to/my_directory hoff_user@hoffman.edu:/u/home6/hoff_user		$ scp -r /path/to/my_directory hoff_user@hoffman.edu:/u/home6/hoff_user-->

	=Matlab=		=Matlab=

Dmargolis: /* Shared Resources */

2017-07-08T15:32:51Z

Shared Resources

← Older revision		Revision as of 15:32, 8 July 2017
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	> help genpath		> help genpath

	=Shared Resources=		<!--=Shared Resources=
	==What shared resources are available to lab members?==		==What shared resources are available to lab members?==
	===''''Important Notes'''===		===''''Important Notes'''===
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	*updates when needed		*updates when needed
	*assist users in any day to day concerns via interactive chat and remote desktop abilities		*assist users in any day to day concerns via interactive chat and remote desktop abilities
	*Configure the clients for backups on request (using mike's script)		*Configure the clients for backups on request (using mike's script)-->

	<!--===Shared Applications and Storage===		<!--===Shared Applications and Storage===

Dmargolis: /* Shared Applications and Storage */

2017-07-08T15:32:27Z

Shared Applications and Storage

← Older revision		Revision as of 15:32, 8 July 2017
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	*Configure the clients for backups on request (using mike's script)		*Configure the clients for backups on request (using mike's script)

	===Shared Applications and Storage===		<!--===Shared Applications and Storage===

	All members of the Cohen & Bookheimer lab groups have equal access to all shared resources on the lab network. They are automatically mounted on managed computers, non-managed users can connect manually. These include:		All members of the Cohen & Bookheimer lab groups have equal access to all shared resources on the lab network. They are automatically mounted on managed computers, non-managed users can connect manually. These include:
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	**afp://npih-miles.lab.ccn.ucla.edu/Office Staff		**afp://npih-miles.lab.ccn.ucla.edu/Office Staff
	*Technical group folder for all software and development projects		*Technical group folder for all software and development projects
	**afp://npih-miles.lab.ccn.ucla.edu/Technical		**afp://npih-miles.lab.ccn.ucla.edu/Technical-->


	<!--===Shared UNIX resources===		<!--===Shared UNIX resources===

Dmargolis: /* Shared UNIX resources */

2017-07-08T15:31:41Z

Shared UNIX resources

← Older revision		Revision as of 15:31, 8 July 2017
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	===Shared UNIX resources===		<!--===Shared UNIX resources===

	All members of the Cohen & Bookheimer lab groups have access to a managed, shared unix utilities for both PPC and Intel platforms.		All members of the Cohen & Bookheimer lab groups have access to a managed, shared unix utilities for both PPC and Intel platforms.
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	**/Volumes/macports/ppc		**/Volumes/macports/ppc
	*Intel binaries are found at:		*Intel binaries are found at:
	**/Volumes/macports/x86		**/Volumes/macports/x86-->

	<!--===Software Assistance===		<!--===Software Assistance===

	All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.-->		All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.-->

Dmargolis: /* Software Assistance */

2017-07-08T15:31:20Z

Software Assistance

← Older revision		Revision as of 15:31, 8 July 2017
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	**/Volumes/macports/x86		**/Volumes/macports/x86

	===Software Assistance===		<!--===Software Assistance===

	All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.		All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.-->

Dmargolis: /* Text File Line Return */

2017-07-08T15:30:39Z

Text File Line Return

← Older revision		Revision as of 15:30, 8 July 2017
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	All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.		All users may also request specific support for any software issue, installation, or configuration via support at ccn dot ucla dot edu.

	~~=== Text File Line Return ===~~

Dmargolis: /* What shared resources are available to lab members? */

2017-07-08T15:29:59Z

What shared resources are available to lab members?

← Older revision		Revision as of 15:29, 8 July 2017
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	Managed vs. NonManaged Computers (e.g. lab vs. personal computers)		Managed vs. NonManaged Computers (e.g. lab vs. personal computers)
	Users who are not on managed computers will need to either point their DNS		Users who are not on managed computers will need to either point their DNS
	server to 10.44.186.11 and 10.44.186.12 or replace npih-miles.lab.ccn.ucla.ed with		server to 10.44.186.11 and 10.44.186.12 or replace npih-miles.lab.ccn.ucla.edu with
	10.44.186.12 in all the below afp urls. If assistance is needed, please send a request		10.44.186.12 in all the below afp urls. If assistance is needed, please send a request
	to support at ccn dot ucla dot edu.		to support at ccn dot ucla dot edu.

Dmargolis: /* How do I archive my data? */

2017-07-08T15:28:08Z

How do I archive my data?

← Older revision		Revision as of 15:28, 8 July 2017
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	tar cvf mytararchivename.tar files /and/paths directories		tar cvf mytararchivename.tar files /and/paths directories

	For more info, please see our [[Tar Tutorial]]		<!--For more info, please see our [[Tar Tutorial]]-->

	=How do I install the Python numerical libraries?=		=How do I install the Python numerical libraries?=

Dmargolis: /* How do I get access to all the FMRI programs? */

2017-07-08T15:26:29Z

How do I get access to all the FMRI programs?

← Older revision		Revision as of 15:26, 8 July 2017
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	Please see our walk through for this process [[Getting_a_Hoffman2_Account \| Getting a Hoffman2 Account]]		Please see our walk through for this process [[Getting_a_Hoffman2_Account \| Getting a Hoffman2 Account]]

	=How do I get access to all the FMRI ~~programs~~?=		=How do I get access to all the FMRI software?=
	~~Once you've been accepted into the FMRI group on hoffman, all you need to do to gain~~ access to ~~the fmri programs is configure your BASH environment as described in~~ [[~~Every_Day_UNIX_and_Working_with_Hoffman#Setting_up_your_Bash_Profile~~ \| ~~Setting Up Your BASH Profile~~]].		To get access to CCN-supported software (AFNI, FSL, FreeSurfer, etc.) see our [[Hoffman2:Modules\|modules page]].

	Besides your normal analysis programs, this also provides access to several helper scripts such as		<!--Besides your normal analysis programs, this also provides access to several helper scripts such as

	* switch_fsl -- used to change between fsl versions on the fly. See switch_fsl --help for more information		* switch_fsl -- used to change between fsl versions on the fly. See switch_fsl --help for more information
	* fix_perms.sh -- this script sets the permissions on all subdirectories and files owned by you to group read/write		* fix_perms.sh -- this script sets the permissions on all subdirectories and files owned by you to group read/write
	* clean_me.py -- a dialog driven script that removes many unneeded files and directories and archives some little used files.		* clean_me.py -- a dialog driven script that removes many unneeded files and directories and archives some little used files.-->

	=What are quotas and how do I view them on Hoffman?=		=What are quotas and how do I view them on Hoffman?=